AMX DESIGN XPRESS V 1.5 - ON SITE INSTALLER GUIDE Betriebsanweisung PDF herunterladen (Seite 4)



Release Notes for Version 1.0

Open Issues in Version 1.0

Part Assembly - Failure to import the GenBank file of the final construct molecule into the Vector

NTI

Express

Designer Software application

Issue:TheexportedGenBankfileformoleculescreatedusingvectorpSB1A3fromtheAssembly

Compatibilitytoolcannotbere‐importedbackintotheVectorNTI

ExpressDesignerSoftware.

Workaround:OpentheexportedGenbankfileusingtexteditor,gototheFeaturesection,andchange

“Misc.Feature”to“misc_feature”beforeimportingintoVectorNTI

ExpressDesignerSoftware.

Incorrect status shown on re-running a completed RBS Analysis job

Issue:IntheRBSAnalysistool,iftheuseropensacompletedjobandre‐runstheanalysis,theoriginal

jobwillshowa‘Running’statusifyoudoubleclickthisjob.

Workaround:Whenthesecondjobiscompleted,thestatusoftheoriginaljobwillreverttothecorrect

statusof‘Completed’.

Multiple parts with a name containing special characters do not get permuted correctly

Issue:SinceAutoDesigndoesnotacceptspecialcharactersinaPartname,theAutoDesigntooldrops

thespecialcharactersandincludesonlythealpha‐numericcharactersinthePartname.

IncaseofmultiplePartshavingspecialandalpha‐numericcharactersinthePartname,inAutoDesign,

whenthespecialcharactersareexcluded,oneormorePartscouldincludethesamealpha‐numeric

charactersintheexactsamesequenceasoneanother,andthereforeonlyonePartwillbeincluded.

Workaround:DonotincludespecialcharactersinthePartnames.

Software becomes unresponsive on generating a Dot Plot for a large sequence

Issue:TheVectorNTI

ExpressDesignerSoftwarebecomesunresponsivewhenperformingRNA

Analysis>GenerateDotPlotfunctionforalargesequence.

Workaround:Refrainfromperformingthisfunctionifthesequenceislargerthan1500bp.

Duplicate warning messages appear when invoking Assembly Compatibility Tool

Issue:Onsomeoccasions,duplicatewarningmessagesappearwithintheCompatibilityCheckErrors/

WarningstablewhileperformingcloningusingeithertheSeamless/HighOrder(Liang,2012),SLIC(Li,

2007),CPEC(Quan,2009)andExo/FillIn/Ligation(Gibson,2009)assemblymethods.

Workaround:Theduplicatewarningmessagesarethesame.Clickingoneitherofthemessageswill

bringupthedialogboxforthecorrectionaction.

Same sequence is returned as the terminator sequence for very short sequences

Issue:ThesamesequenceisbeingcalculatedastheterminatorsequencewhenrunningtheTerminator

Calculatortoolagainstveryshortsequences(<10bps).

Workaround:OpenuptheRNAStructuretool,andmanuallycheckthesecondarystructuretoexamine

theterminatorsequence.

An additional warning message for checking non-adjacent homologous sequence appears in the

Compatibility Check Errors table.

Issue:DuplicatewarningmessagesappearwithintheCompatibilityCheckErrorstablewhilechecking

non‐adjacenthomologoussequences.

4 Vector NTI

Express

Designer Installation and Licensing Guide

1 2 3 4 5 6 7 8 9 ... 21 22

Kommentare zu diesen Handbüchern

Keine Kommentare

AMX DESIGN XPRESS V 1.5 - ON SITE INSTALLER GUIDE Betriebsanweisung Seite 4

Kommentare zu diesen Handbüchern